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Time-Series Analysis for the Number of Foot and Mouth Disease Outbreak Episodes in Cattle Farms in Thailand Using Data from 2010-2020 (2022)
Journal Article
Punyapornwithaya, V., Mishra, P., Sansamur, C., Pfeiffer, D., Arjkumpa, O., Prakotcheo, R., …Jampachaisri, K. (2022). Time-Series Analysis for the Number of Foot and Mouth Disease Outbreak Episodes in Cattle Farms in Thailand Using Data from 2010-2020. Viruses, 14(7), https://doi.org/10.3390/v14071367

Thailand is one of the countries where foot and mouth disease outbreaks have resulted in considerable economic losses. Forecasting is an important warning technique that can allow authorities to establish an FMD surveillance and control program. This... Read More about Time-Series Analysis for the Number of Foot and Mouth Disease Outbreak Episodes in Cattle Farms in Thailand Using Data from 2010-2020.

Combining analytical approaches and multiple information sources to improve interpretation of diagnostic test results for tuberculosis in wild meerkats (2021)
Journal Article
Patterson, S., Clarke, C., Clutton Brock, T., Miller, M., Parsons, S., Pfeiffer, D., …Drewe, J. (2021). Combining analytical approaches and multiple information sources to improve interpretation of diagnostic test results for tuberculosis in wild meerkats. Animals,

Diagnostic tests are used to classify individual animals’ infection statuses. However, validating test performance in wild animals without gold standard tests is extremely challenging, and the issue is further complicated in chronic conditions where... Read More about Combining analytical approaches and multiple information sources to improve interpretation of diagnostic test results for tuberculosis in wild meerkats.

Evaluation of strategies using simulation model to control a potential outbreak of highly pathogenic avian influenza among poultry farms in Central Luzon, Philippines. (2020)
Journal Article
Salvador, R., Tanquilut, N., Macmac, R., Na Lampang, K., Chaisowwong, W., Pfeiffer, D., & Punyapornwithaya, V. (2020). Evaluation of strategies using simulation model to control a potential outbreak of highly pathogenic avian influenza among poultry farms in Central Luzon, Philippines. PLoS ONE, 15(9), e0238815

The Philippines confirmed its first epidemic of Highly Pathogenic Avian Influenza (HPAI) on August 11, 2017. It ended in November of 2017. Despite the successful management of the epidemic, reemergence is a continuous threat. The aim of this study wa... Read More about Evaluation of strategies using simulation model to control a potential outbreak of highly pathogenic avian influenza among poultry farms in Central Luzon, Philippines..

Identification of High-Risk Areas for the Spread of Highly Pathogenic Avian Influenza in Central Luzon, Philippines (2020)
Journal Article
Salvador, R., Tanquilut, N., Na Lampang, K., Chaisowwong, W., Pfeiffer, D., & Punyapornwithaya, V. (2020). Identification of High-Risk Areas for the Spread of Highly Pathogenic Avian Influenza in Central Luzon, Philippines. Veterinary Sciences, 7(3), 107

Highly pathogenic avian influenza virus (HPAIV) is a major problem in the poultry industry. It is highly contagious and is associated with a high mortality rate. The Philippines experienced an outbreak of avian influenza (AI) in 2017. As there is alw... Read More about Identification of High-Risk Areas for the Spread of Highly Pathogenic Avian Influenza in Central Luzon, Philippines.

Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome (2020)
Journal Article
Kim, Y., Leung, M. H. Y., Kwok, W., Fournié, G., Li, J., Lee, P. K. H., & Pfeiffer, D. U. (2020). Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome. https://doi.org/10.1186/s42523-020-0022-2

As one of the most densely populated microbial communities on Earth, the gut microbiota serves as an important reservoir of antibiotic resistance genes (ARGs), referred to as the gut resistome. Here, we investigated the association of dietary nutriti... Read More about Antibiotic resistance gene sharing networks and the effect of dietary nutritional content on the canine and feline gut resistome.

Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets (2019)
Journal Article
Vergne, T., Meyer, A., Long, P. T., Elkholly, D. A., Inui, K., Padungtod, P., …Pfeiffer, D. U. (2019). Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets. https://doi.org/10.1038/s41598-018-37616-1

Live bird markets (LBMs) are major targets for avian influenza virus (AIV) surveillance programmes. While sampling the LBM environment has become a widely used alternative to the labour-intensive sampling of live poultry, the design of surveillance p... Read More about Optimising the detectability of H5N1 and H5N6 highly pathogenic avian influenza viruses in Vietnamese live-bird markets.

Exploring the fate of cattle herds with inconclusive reactors to the tuberculin skin test (2018)
Journal Article
Brunton, L. A., Prosser, A., Downs, S. H., & Pfeiffer, D. U. (2018). Exploring the fate of cattle herds with inconclusive reactors to the tuberculin skin test. Frontiers in Veterinary Science, 5(228), https://doi.org/10.3389/fvets.2018.00228

Bovine tuberculosis (TB) is an important animal health issue in many parts of the world. In England and Wales, the primary test to detect infected animals is the single intradermal comparative cervical tuberculin test, which compares immunological re... Read More about Exploring the fate of cattle herds with inconclusive reactors to the tuberculin skin test.

Competing biosecurity and risk rationalities in the Chittagong poultry commodity chain, Bangladesh (2018)
Journal Article
Høg, E., Fournié, G., Hoque, M. A., Mahmud, R., Pfeiffer, D. U., & Barnett, T. (2018). Competing biosecurity and risk rationalities in the Chittagong poultry commodity chain, Bangladesh. BioSocieties, https://doi.org/10.1057/s41292-018-0131-2

This paper anthropologically explores how key actors in the Chittagong live bird trading network perceive biosecurity and risk in relation to avian influenza between production sites, market maker scenes and outlets. They pay attention to the past an... Read More about Competing biosecurity and risk rationalities in the Chittagong poultry commodity chain, Bangladesh.

Livestock trade network: potential for disease transmission and implications for risk-based surveillance on the island of Mayotte (2018)
Journal Article
Kim, Y., Dommergues, L., M'sa, A. B., Mérot, P., Cardinale, E., Edmunds, J., …Métras, R. (2018). Livestock trade network: potential for disease transmission and implications for risk-based surveillance on the island of Mayotte. https://doi.org/10.1038/s41598-018-29999-y

The island of Mayotte is a department of France, an outermost region of the European Union located in the Indian Ocean between Madagascar and the coast of Eastern Africa. Due to its close connection to the African mainland and neighbouring islands, t... Read More about Livestock trade network: potential for disease transmission and implications for risk-based surveillance on the island of Mayotte.

A dynamic model of transmission and elimination of peste des petits ruminants in Ethiopia (2018)
Journal Article
Fournié, G., Waret-Szkuta, A., Camacho, A., Yigezu, L. M., Pfeiffer, D. U., & Roger, F. (2018). A dynamic model of transmission and elimination of peste des petits ruminants in Ethiopia. https://doi.org/10.1073/pnas.1711646115

Peste des petits ruminants (PPR), a devastating viral disease of sheep and goats, has been targeted by the global community for eradication within the next 15 years. Although an efficacious attenuated live vaccine is available, the lack of knowledge... Read More about A dynamic model of transmission and elimination of peste des petits ruminants in Ethiopia.

epidemix-An interactive multi-model application for teaching and visualizing infectious disease transmission (2018)
Journal Article
Muellner, U., Fournié, G., Muellner, P., Ahlstrom, C., & Pfeiffer, D. U. (2018). epidemix-An interactive multi-model application for teaching and visualizing infectious disease transmission. Epidemics, 23, 49-54. https://doi.org/10.1016/j.epidem.2017.12.003

Mathematical models of disease transmission are used to improve our understanding of patterns of infection and to identify factors influencing them. During recent public and animal health crises, such as pandemic influenza, Ebola, Zika, foot-and-mout... Read More about epidemix-An interactive multi-model application for teaching and visualizing infectious disease transmission.

The applicability of animal health surveillance systems for post-market monitoring of potential adverse effects of genetically modified (GM) feed (2018)
Journal Article
Vince, L., Kleter, G. A., Kostov, K., Pfeiffer, D. U., & Guitian, J. (2018). The applicability of animal health surveillance systems for post-market monitoring of potential adverse effects of genetically modified (GM) feed. Food and Chemical Toxicology, https://doi.org/10.1016/j.fct.2018.04.034

A facultative post market monitoring of potential health impacts of genetically modified (GM) feedstuffs on livestock consuming these feeds after pre-market risk assessment is under ongoing consideration. Within the IPAFEED database, scientific studi... Read More about The applicability of animal health surveillance systems for post-market monitoring of potential adverse effects of genetically modified (GM) feed.

Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam (2018)
Journal Article
Meyer, A., Dinh, T. X., Han, T. A., Do, D. V., Nhu, T. V., Pham, L. T., …Vergne, T. (2018). Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam. Transboundary and Emerging Diseases, 65(2), 408-419. https://doi.org/10.1111/tbed.12697

Highly pathogenic avian influenza (HPAI) viruses continue to threaten smallholder poultry producers in several South‐east Asian countries, including Vietnam. In particular, the free‐grazing duck system has been repeatedly highlighted as a major risk... Read More about Trade patterns facilitating highly pathogenic avian influenza virus dissemination in the free-grazing layer duck system in Vietnam.

A large-scale study of a poultry trading network in Bangladesh: implications for control and surveillance of avian influenza viruses (2018)
Journal Article
Moyen, N., Ahmed, G., Gupta, S., Tenzin, T., Khan, R., Khan, T., …Fournié, G. (2018). A large-scale study of a poultry trading network in Bangladesh: implications for control and surveillance of avian influenza viruses. BMC Veterinary Research, 14(1), https://doi.org/10.1186/s12917-018-1331-5

Since its first report in 2007, avian influenza (AI) has been endemic in Bangladesh. While live poultry marketing is widespread throughout the country and known to influence AI dissemination and persistence, trading patterns have not been described.... Read More about A large-scale study of a poultry trading network in Bangladesh: implications for control and surveillance of avian influenza viruses.

A Systematic Review and Meta-Analysis of Practices Exposing Humans to Avian Influenza Viruses, Their Prevalence, and Rationale (2017)
Journal Article
Fournié, G., Høg, E., Barnett, T., Pfeiffer, D. U., & Mangtani, P. (2017). A Systematic Review and Meta-Analysis of Practices Exposing Humans to Avian Influenza Viruses, Their Prevalence, and Rationale. American Journal of Tropical Medicine and Hygiene, 97(2), 376-388. https://doi.org/10.4269/ajtmh.17-0014

Almost all human infections by avian influenza viruses (AIVs) are transmitted from poultry. A systematic review was conducted to identify practices associated with human infections, their prevalence, and rationale. Observational studies were identifi... Read More about A Systematic Review and Meta-Analysis of Practices Exposing Humans to Avian Influenza Viruses, Their Prevalence, and Rationale.

Economic factors influencing zoonotic disease dynamics: demand for poultry meat and seasonal transmission of avian influenza in Vietnam (2017)
Journal Article
Delabouglise, A., Choisy, M., Phan, T. D., Antoine-Moussiaux, N., Peyre, M., Vu, T. D., …Fournié, G. (2017). Economic factors influencing zoonotic disease dynamics: demand for poultry meat and seasonal transmission of avian influenza in Vietnam. Scientific Reports, 7, 5905. https://doi.org/10.1038/s41598-017-06244-6

While climate is often presented as a key factor influencing the seasonality of diseases, the importance of anthropogenic factors is less commonly evaluated. Using a combination of methods-wavelet analysis, economic analysis, statistical and disease... Read More about Economic factors influencing zoonotic disease dynamics: demand for poultry meat and seasonal transmission of avian influenza in Vietnam.

Herd-level animal management factors associated with the occurrence of bovine neonatal pancytopenia in calves in a multicountry study (2017)
Journal Article
Sauter-Louis, C., Jones, B. A., Henning, J., Stoll, A., Nielen, M., Van Schaik, G., …Pfeiffer, D. U. (2017). Herd-level animal management factors associated with the occurrence of bovine neonatal pancytopenia in calves in a multicountry study. PLoS ONE, 12(7), https://doi.org/10.1371/journal.pone.0179878

Since 2007, mortality associated with a previously unreported haemorrhagic disease has been observed in young calves in several European countries. The syndrome, which has been named ‘bovine neonatal pancytopenia’ (BNP), is characterised by thrombocy... Read More about Herd-level animal management factors associated with the occurrence of bovine neonatal pancytopenia in calves in a multicountry study.